@arminscheben Profile picture

Armin Scheben

@arminscheben

Postdoc in Computational Biology at Cold Spring Harbor Laboratory. Doing comparative genomics, mostly in🌱. Sharing cool #science.

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Armin Scheben Reposted

New genetic barcoding technology developed at @WeillCornell can help CSHL researchers map where metastatic prostate cancer spreads, and maybe one day roadblock cancer. @asiepel @arminscheben cshl.edu/how-does-cance…


Armin Scheben Reposted

How TEs gain and lose between tropical and temperate maize inbreds? We found that tropical corns have 35Mb more TEs than temperates, and it's mainly due to a small number of LTR families that are young, less methylated, and more expressed in tropical maize.pubmed.ncbi.nlm.nih.gov/39251347/

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Armin Scheben Reposted

PlantCaduceus - Cross-species modeling of plant genomes Led by Jingjing Zhai and Aaron Gokaslan, with the Kuleshov lab, we’re having our “ChatGPT moment” with DNA Large Models. PlantCaduceus predicts functional DNA sequences with single base resolution across flowering plants.


Armin Scheben Reposted

So great to see this paper out in @Nature Beautiful molecular characterization of a new toxin-antidote drive system in maize, led by Ben berube, with assistance from Martienssen lab @antnerves @CrisAlves_bio @BioJlynn and collaborators @arminscheben @jrossibarra Jerry Kermicle

Why was corn able to spread and adapt so rapidly across the Americas 4,000 years ago? Research from CSHL’s Rob Martienssen suggests that the answer may lie in a genetic system called Teosinte Pollen Drive. cshl.edu/corns-missing-…



Armin Scheben Reposted

Very excited to be starting my group this autumn at ithems.riken.jp/en @RIKEN_JP and we’re hiring! riken.jp/en/careers/res… Many more fellowship opportunities as well, please get in touch if interested and see you in Tokyo!


Armin Scheben Reposted

My group is recruiting a bioinformatician for genomic studies in maize. The position includes work on diverse projects and collaborations with the Maize Genetics and Genomics Database (@MaizeGDB), the CERCA project, and others in the Hufford Lab. isu.wd1.myworkdayjobs.com/IowaStateJobs/…


Armin Scheben Reposted

You like plant biodiversity and genomic methods? We are looking for a #Postdoc @LMU_Muenchen Apply until July 31, 2024. Please RT! 🌱🌵🧬#PlantSciJobs job-portal.lmu.de/jobposting/d48…


Had an invigorating day of scientific presentation and discussion at Friday's #NYAPG24 meeting with @Stephen_Stak The poster sessions on a rooftop were a great opportunity to draw in the plant-curious crowd and reconnect with old friends and poster neighbors like @JianjunJin

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Armin Scheben Reposted

I am hiring a postdoc to work on evolutionary genomics projects with maize and its wild relatives. This is part of a broad collaborative project known as CERCA that aims to improve maize with adaptations from the wild. Please share or consider applying! isu.wd1.myworkdayjobs.com/IowaStateJobs/…


Armin Scheben Reposted

I'm excited to share our latest research on the mechanisms of splice-modifying drugs. We studied how two small-molecule drugs, risdiplam and branaplam, work. The results challenge the existing understanding of these two drugs. nature.com/articles/s4146…


Armin Scheben Reposted

The MaizeCODE paper is on BioRXiv! New insights on enhancers in plants and a lot of data for every maize (epi)geneticist to play with, including on teosinte, the ancestor of maize. A big team effort, very grateful to everyone involved! biorxiv.org/content/10.110…


Armin Scheben Reposted

MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication. biorxiv.org/cgi/content/sh… #biorxiv_plants


Armin Scheben Reposted

Thread about a new preprint from the lab, led by Logan Whitehouse and Dylan Ray, about tree-sequences. The teaser tagline: why use tree sequences for evolutionary inference when you can directly examine population genetic alignments? biorxiv.org/content/10.110…


Armin Scheben Reposted

Half a million models + many duck jokes later, I'm excited to share the preprint for nQuack: biorxiv.org/content/10.110… This project started as a paragraph in a paper with @JLandisBotany, @RobertLaport, and @desert_hopping But morphed into a new method and package. (1/n)

.@ShellyGaynor introduces nQuack, a program to ID autopolyploids w/sequencing data - many theoretical advantages over similar tools like nQuire. Will be available on GitHub soon! Very grateful for folks like Shelly who do the math so I don’t have to… #Botany2023

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Armin Scheben Reposted

Come join us @ZuckermanBrain on May 17th for the 2024 New York Area Population Genetics Meeting. Keynotes by @lindymcbr and @CedricFeschotte Register here zuckermaninstitute.columbia.edu/new-york-area-…


Armin Scheben Reposted

Interested in cutting-edge genomics, pan-genomics, and crop bioinformatics? 🌱💻 Join our newly established Computational Plant Biology group at TUM! We're excited to see your application. Please spread the word! Apply now: shorturl.at/hxBOS #Genomics #Bioinformatics #TUM


Armin Scheben Reposted

The Zeavolution webinar on maize evolution will have it's first 2024 meeting tomorrow at 10am CST. @MohamedElWalid (Buckler Lab at Cornell) will get us started! DM me if you need to be added to the Zeavolution Slack, need connection details, or would like to speak in the series!


Great to return to San Diego for #PAG31 to present my work on constraint and divergence in the noncoding genomes of maize and its relatives in the 'Comparative Genomics' workshop today at 10.30am. Looking forward to lots of conversations on genomics and beyond.

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Armin Scheben Reposted

Super excited about our new paper entitled ‘Convergence in carnivorous pitcher plants reveals a mechanism for composite trait evolution’ just out in @ScienceMagazine and featured on the cover!

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Armin Scheben Reposted

Happy to share our recent work publishing in a rising journal @iMetaScience . Duck pan‐genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution. And thanks for mybro support @arminscheben onlinelibrary.wiley.com/doi/10.1002/im…


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