Vincent Noël (@vincent-noel.fr on BlueSky)
@vincentnoel72Research scientist in @SysBioCurie team at @institut_curie. Modeling and simulating biological systems with multiscale frameworks. #MaBoSS,#PhysiBoSS developer
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Our #PhysiBoSS tutorial is finally available as a preprint: arxiv.org/abs/2406.18371! Learn how to build #multiscale models with #Boolean intracellular signaling, without any code, using #PhysiCell Studio. Showing 3 simple examples, and an update of @MRuscone invasion model 👇
At the @CanceropoleGSO conference? Can't miss our poster by Hugo Chenel on regulatory networks in #CLL, first step of our #RD2Bool project with @malvina_marku L. Calzone @SysBioCurie @loicpauleve More tomorrow!
This week in Math Onco 313 is in your inbox... Antifragility, virtual patients, hypoxia, reaction-diffusion, and more. Art: @CicelyKrystyna, @robynshutt, @vincentnoel72, @MRuscone 😎💯 Signup: mathematical-oncology.org/newsletter
The latest addition to our PhysiCell Ecosystem series is this new plugin for cell fibres from @vincentnoel72 et al. PhysiMeSS - a new physiCell addon for extracellular matrix modelling doi.org/10.46471/gigab…
One more milestone for the #PhysiCell community: we’re thrilled to announce our latest publication in Briefings in Bioinformatics - "Building Multiscale Models with #PhysiBoSS, an Agent-Based Modeling Tool" 🧬📊 Check out the full article here: academic.oup.com/bib/article/25… (1/6)
🧵 I am happy to introduce NeKo🐱, a Python package to automate the construction of biological networks from prior knowledge, reducing the manual curation burden! 🚀 Check the preprint and let us know what you think! biorxiv.org/content/10.110… #Bioinformatics #NetworkBiology #Python
Great to see Dr. @MRuscone give a lightning talk on NeKo at the @SysBioCurie international course! NeKo os a cool tool to help build gene regulatory networks from literature. #mathnco
.@ArnauMontagud : PhysiBoSS is a project that can only happen because of #OpenSource!! YES!!!!! @PhysiCell is really meeting its potential with this amazing community. @IUImpact @IULuddy
Very happy to present today PhysiBoSS 2.0 at @ECCBinfo in beautiful Turku! One more step towards having human digital twins from @SysBioCurie @institut_curie, @Alfons_Valencia @BSC_CNS and @i2sysbio More info on the paper here: nature.com/articles/s4154…
PhysiCell 1.14.0 is out! Key features: • improved cell behavior grammar • better phagocytosis, effector attack, and cell damage • updated PhysiBoSS & PhysiMeSS & more! #mathonco #opensource @IUImpact @mathoncoblog Release notes & downloads: github.com/MathCancer/Phy…
After a long time, a lot of hard work, and equal amounts of enthusiasm, RDA has endorsed our WG for Building Immune Digital Twins! We are ready to embark on a two-year journey to bring some exciting deliverables to life. Would you like to join us? rd-alliance.org/groups/buildin…
The Federal University of Rio de Janeiro @ufrj is organising an international course on systems biology this october! I'll be participating, giving a lecture on how to build multiscale models with PhysiBoSS. Still one week to register 👉 even3.com.br/v-sysbiorio/. Don't miss it!
No dia 10/jul, terei o prazer de dar um seminário na @fiocruz, no programa de computação científica! Apresentarei meu trabalho na construção de modelos multiescalas para biologia de sistemas, rumo ao desenvolvimento de gêmeos digitais. Com transmissão. 👉 tinyurl.com/5b6jysh4
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Marco Ruscone, PhD
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Arnau Montagud
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