Phytozome
@phytozomePhytozome is the Department of Energy Joint Genome Institute's Comparative Plant Genomics portal.
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Out now @plantjournal 717 genome-not one but two T2T assemblies for P. tremula & P. alba @phytozome! Creative work by @RanRichard uncovered aspen-specific megabase satellite repeats that form chromosome knobs! @corncolors @Schmitz_Lab @jgi @hudsonalpha doi.org/10.1111/tpj.16…
"This was the most complicated genome sequence we’ve yet completed. It shows how far we’ve come. This is the kind of thing that 10 yrs ago people thought was impossible.” -Jeremy Schmutz @jgi @hudsonalpha @jbei @BerkeleyLab @phytozome @doescience @Nature newscenter.lbl.gov/2024/03/27/swe…
(application link open 'till Mar 15) The Phytozome group at the @jgi Plant Program has an opening for a genomics database, warehousing and pipeline expert: lbl.referrals.selectminds.com/jobs/genomics-…
The Phytozome group at the @jgi Plant Program has an opening for a genomics database, warehousing and pipeline expert lbl.referrals.selectminds.com/jobs/genomics-…
An updated version 6 𝘎𝘭𝘺𝘤𝘪𝘯𝘦 𝘮𝘢𝘹 (soybean) genome is now available at phytozome.jgi.doe.gov/info/Gmax_Wm82… @jgi @hudsonalpha @CFANS
Two Yucca genomes just released in Phytozome: haplotype-resolved 𝘠. 𝘧𝘪𝘭𝘢𝘮𝘦𝘯𝘵𝘰𝘴𝘢 at phytozome.jgi.doe.gov/info/Yfilament…, and 𝘠. 𝘢𝘭𝘰𝘪𝘧𝘰𝘭𝘪𝘢 at phytozome.jgi.doe.gov/info/Yaloifoli… @kheyduk @ORNL @jleebensmack @jgi
We are pleased to host the haplotype-resolved genome of European hazelnut (𝘊𝘰𝘳𝘺𝘭𝘶𝘴 𝘢𝘷𝘦𝘭𝘭𝘢𝘯𝘢) at phytozome.jgi.doe.gov/info/Cavellana… @OSUAgSci @jgi
An updated carrot (𝘋𝘢𝘶𝘤𝘶𝘴 𝘤𝘢𝘳𝘰𝘵𝘢) genome is now available at phytozome.jgi.doe.gov/info/Dcarota_v… @UW_Hort @jgi
Grab yourself a nice Chianti and enjoy the fava bean (𝘝𝘪𝘤𝘪𝘢 𝘧𝘢𝘣𝘢) genome we recently added at phytozome.jgi.doe.gov/info/Vfaba_v1_1 @AarhusUni_int @jgi
Two additional switchgrass (𝘗𝘢𝘯𝘪𝘤𝘶𝘮 𝘷𝘪𝘳𝘨𝘢𝘵𝘶𝘮) accessions released in Phytozome: VS16 (phytozome.jgi.doe.gov/info/Pvirgatum…) and DAC6 (phytozome.jgi.doe.gov/info/Pvirgatum…) @jgi @hudsonalpha @texas_IB
32 Sorghum bicolor accessions sequenced and released in Phytozome as part of SorghumPan. Access them at phytozome.jgi.doe.gov/sorghumpan . See pangenes aligned against the Sbicolor v5.1 reference at phytozome.jgi.doe.gov/sorghumpan/jbr…
Two new plant releases in the Open Green Genomes (phytozome.jgi.doe.gov/ogg) project: soapwort (phytozome.jgi.doe.gov/info/Sofficina…) and anacua (phytozome.jgi.doe.gov/info/EanacuaAZ…) @jlmlab @AnneOsbourn1 @jgi
Phytozome's website will be down today (Wednesday Oct 4th) for a @NERSC maintenance. Expect it to return by 20:00 PDT
A postdoc position is available in my lab! If you have experience in microscopy, roots, microbes or high throughput anatomical phenotyping - please apply! Please RT. recruit.ucdavis.edu/JPF05944
We are happy to present a preprint on BRAKER3, the pipeline for fully automated structural genome annotation with GeneMark-ETP, AUGUSTUS, and TSEBRA, using both RNA-Seq and protein database. biorxiv.org/cgi/content/sh…
I'm hiring! We're looking for a post-doctoral researcher with experience in plant genetics and/or development for my lab at MIT. careers.peopleclick.com/careerscp/clie…
Please RT Last few days left to apply! 4 positions to join us at Oxford, driving the next phase of development to OrthoFinder 🧬 We have so many cool ideas and fun things to try. Lets enhance the communities comparative genome capability together! 👉shorturl.at/gtHKT
Colonel Mustard has re-entered the drawing room! A new assembly and annotation of 𝐵𝑟𝑎𝑠𝑠𝑖𝑐𝑎 𝑟𝑎𝑝𝑎 ssp. trilocularis R500 (yellow sarson) is available at phytozome.jgi.doe.gov/info/Brapassp_… @umncbs @jgi @hudsonalpha
Annotated genomes for two hazelnut (𝐶𝑜𝑟𝑦𝑙𝑢𝑠 𝑎𝑚𝑒𝑟𝑖𝑐𝑎𝑛𝑎) accessions, Rush and Winkler, are now available at phytozome.jgi.doe.gov/info/Camerican… and phytozome.jgi.doe.gov/info/Camerican… @UWMadisonCALS @USDA_NIFA @ArnoldArboretum @jgi
In time for the bloom: npr.org/sections/pictu… The genome of the California poppy () is now available at phytozome.jgi.doe.gov/info/Ecaliforn… @jleebensmack @jlugiessen @jgi @hudsonalpha
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