@incaRNAtolab Profile picture

Danny IncaRNAto

@incaRNAtolab

Associate Professor in Molecular Genetics @univgroningen @ResearchGbb | CSO @serna_bio | #RNA structure ensembles & dynamics | 🦋 https://t.co/VfgPl0N4ay

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Pinned

Very excited to share our latest preprint, led by rockstar post-doc @i_borovska Our humble attempt to begin exploring #RNA secondary structure ensembles in a living cell (biorxiv.org/content/10.110…) (1/n)


A survey of thousands of #lncRNAs using CRISPR screening across multiple cell lines identifies 46 essential and >700 context-specific lncRNAs, crucial for cell survival! Check it out: cell.com/cell/fulltext/…


Please retweet 🙏: 2 @ERC_Research-funded Post-doc positions are available in our lab to investigate #RNA structural ensemble and their dynamics in living cells. Application link: rug.nl/about-ug/work-…


Danny IncaRNAto Reposted

Pleased to share our new article "Direct testing of natural twister ribozymes from over a thousand organisms reveals a broad tolerance for structural imperfections" out in @NAR_Open academic.oup.com/nar/advance-ar…

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Danny IncaRNAto Reposted

Extremely powerful and exciting: AI-driven Foundation Model - by @YiliangDing @EMBLEvents #EESRNA. I believe this would largely accelerate the development of Biology: AI-guided experimental design! A ms in press @NatureMachineIntelligence

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Danny IncaRNAto Reposted

We are very excited to introduce ATENA (Approach to Target Exact Nucleic Acid alternative structures), as a new tool to target individual G4s in living cells using chemically modified CRISPR/Cas9 proteins👇👇👇 biorxiv.org/content/10.110…

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Fantastic work on the mode of action of an #RNA-targeted splicing modulator on the recognition of 5' splice sites by the U1 snRNP, check it out!

Happy to say our collaborative work, spearheaded by David White and with @RemixThera, is now out! In this work we studied 5' splice site recognition by U1 and its modulation by a drug called branaplam. nature.com/articles/s4146…



Danny IncaRNAto Reposted

Since the discovery of RNA splicing and its role in gene expression, researchers have sought a set of rules, an algorithm or a computational model that could predict the splice isoforms, and their frequencies, produced from any transcribed gene in a specific cellular context

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#RNA Framework, critical update. To all the users: during the last commit a bug was inadvertently introduced in the rf-count module. This is now fixed. We advise you to pull the latest commit asap. Apologies for any inconvenience this might have caused! github.com/dincarnato/RNA…


Danny IncaRNAto Reposted

Many very good opportunities here to focus on cutting edge science projects in the biological sciences

Our PhD applications have launched today! We have projects in epigenetics, signalling and immunology 🥼 Check out the projects on our website: babraham.ac.uk/work-and-study…



SHAPEwarp v2.1.0 for #RNA SHAPE-guided similarity search is out (github.com/dincarnato/SHA…), featuring a massive 4 to 5-fold speed up! Also, several new databases added to SHAPEwarp-web (shapewarp.incarnatolab.com). Check it out!


Danny IncaRNAto Reposted

New 📜 in @NatureSMB - "Structural features within the NORAD long noncoding RNA underlie efficient repression of Pumilio activity", by Sveta in my lab, @omerz213 @ericmiska and Lau and Greg @kudlalab Been a while since preprint, so a 🧵 nature.com/articles/s4159…


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