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Simon Zhongyuan Tian

@TianZhongyuan

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3D chromatin structures associated with ncRNA roX2 for hyperactivation and coactivation across the entire X chromosome | Science Advances science.org/doi/10.1126/sc…


3D chromatin structures associated with ncRNA roX2 for hyperactivation and coactivation across the entire X chromosome.Sci. Adv.10,eado5716(2024).DOI:10.1126/sciadv.ado5716

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science.org/doi/10.1126/sc… 3D chromatin structures associated with ncRNA roX2 for hyperactivation and coactivation across the entire X chromosome.

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Simon Zhongyuan Tian Reposted

Biology Questions? We've Got You! Explore novel insights and precise answers. Access a treasure trove of 130,897+ papers, updated daily. Discover more: BioloGPT.com


Simon Zhongyuan Tian Reposted

Cancer cells are characterized by a remarkable capacity to transport glucose only comparable to brain and contractile muscle. Such an efficient glycolytic capacity… Mutations in genes like MYC, tumor suppression factors like p53 and transcription factors like HIF-1 increase…

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What if the missing X factor is what we eat? Why is insulin resistance found so frequently in those with common cancers? Coincidence or Cause?



Simon Zhongyuan Tian Reposted

A simplified overview of brain functions #neuroscience

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Simon Zhongyuan Tian Reposted

Important read regarding Spike S2 and p53 from @weldeiry biorxiv.org/content/10.110…


Simon Zhongyuan Tian Reposted

A new study evaluates the performance of GPT-4 for single-cell type annotation. @ZhichengJi @HWenpin nature.com/articles/s4159…

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Simon Zhongyuan Tian Reposted

Simon Zhongyuan Tian Reposted

What high-performance language to learn in bioinformatics? I have been asked many times on the question, so I decided to write down my thought in a blog post. This is going to be controversial. lh3.github.io/2024/03/05/wha…


Simon Zhongyuan Tian Reposted

We are very excited to share ‘An immune cell atlas reveals the dynamics of human macrophage specification during prenatal development’, published in @CellCellPress today doi.org/10.1016/j.cell…. @CellPressNews (1/2)

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Simon Zhongyuan Tian Reposted

You can make an entire figure in R using the patchwork package. A tutorial is available at my GitHub to generate this exact figure (github.com/cxli233/Online…). It covers controlling layout, relative heights/widths of panels, hierarchical assembly, and position of letter labels.

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Simon Zhongyuan Tian Reposted

#Viruses infecting #bacteria & #archaea are often identified via metagenomics, but information regarding #phage hosts is lost. @simroux_virus &co present iPHoP, a new tool to maximize host prediction for #metagenome-assembled virus genomes #PLOSBiology plos.io/41A5QvG

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Simon Zhongyuan Tian Reposted

ggpicrust2: an R package for PICRUSt2 predicted functional profile analysis and visualization. arxiv.org/abs/2303.10388 github.com/cafferychen777… #microbiome #picrust2 #bioinformatics #RStats

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Simon Zhongyuan Tian Reposted

Best practices for single-cell analysis across modalities | Nature Reviews Genetics nature.com/articles/s4157… #Bioinformatics

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Simon Zhongyuan Tian Reposted

So great to see everyone at #AACR23! Looking forward to seeing you all next year. #NCIITCR

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Simon Zhongyuan Tian Reposted

🧵1/9 Let's talk about methods for identifying the optimal number of clusters in cluster analysis! Cluster analysis is a technique used to group data points based on their similarity. Here are some popular methods & R packages. #RStats #DataScience

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Simon Zhongyuan Tian Reposted

Thrilled to share the first last-author work, FIPRESCI @GenomeBiology It can efficiently get more than 100,000 5'-end scRNA-seq data in a single channel of 10X Genomics. Compatible with scVDJ-seq and profiling of cis-regulatory elements activity. bit.ly/3UXzzw2

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Simon Zhongyuan Tian Reposted

Exciting news! #BGI-Research co-led study just landed the cover story of @CellCellPress with the discovery of the large-size Antarctic krill #genome, which unveils krill's population dynamics and adaptations to the Antarctic environment. Congratulations to the science team👏🏼!

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Simon Zhongyuan Tian Reposted

Am thinking of starting new university: Texas Institute of Technology & Science


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