Jakob Wasserthal
@JakobWasserthalBuilding AI solutions for medical imaging at University Hospital Basel. Author of TotalSegmentator. Previously @mic_dkfz
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We're excited to announce the biggest update to TotalSegmentator since its launch! We're adding 65 new structures, all focused on the head and neck region. Check out the new tasks: head_glands_cavities, head_muscles, headneck_bones_vessels, and headneck_muscles for more details.
1) Let me introduce you to Statsmed (github.com/segemart/stats…) - We designed Statsmed for you to perform statistical analysis of medical data easily and get a fast overview of you data with python
We added support for MR images to TotalSegmentator. It now segments 59 structures in MR images, regardless of sequence and contrast. code: github.com/wasserth/Total… paper: arxiv.org/abs/2405.19492 annotated dataset: doi.org/10.5281/zenodo… online tool: totalsegmentator.com
Is the size of an organ within the norm? Our free online tool automatically calculates organ volumes from CT scans and compares them to the standard population distribution, providing a percentile ranking. Try it out: compute.totalsegmentator.com/volume-report/
TotalSegmentator v2 is here: - 33 new classes - up to 32x faster runtime on CPU - improved label quality - larger training dataset (n=1559) - uses nnU-Net v2 Details: github.com/wasserth/Total…
We published our dataset (doi.org/10.5281/zenodo…) making it the largest openly available dataset of child brain MRIs aging 0 to 36 months.
#DeepLearning ensemble model of brain MRIs precisely predicted brain myelin maturity of 710 infants and children buff.ly/3YdwyJM @Tugba_Akinci_MD @JakobWasserthal @UniSpitalBasel #PedsRad #AI #MachineLearning
All NeuroImage and NeuroImage:Reports editors have resigned over the high publication fee, and are starting a new non-profit journal imaging-neuroscience.org This comes with great regret, and a huge amount of thought and discussion- please read announcement to get more details.
nnU-Net has stood the test of time, continues to deliver excellent results and inspires the community as a framework for building new segmentation methods! It is with great excitement that we announce the release of nnU-Net V2 🎉😍 ➡ github.com/MIC-DKFZ/nnUNet 🧵(1/8)
TotalSegmentator now also segments: body trunc, body extremities, skin, lung vessels, intracerebral hemorrhage, hip implant, coronary arteries, pleural effusion, pericardial effusion Try it for yourself: github.com/wasserth/Total…
TotalSegmentator now also works on Windows and on CPU, making it accessible to more people. github.com/wasserth/Total…
Robust segmentation of 104 anatomical structures in CT images online tool: totalsegmentator.com paper: arxiv.org/abs/2208.05868 pretrained model: github.com/wasserth/Total… dataset of 1204 subjects: doi.org/10.5281/zenodo… @maierhein @lena_maierhein @alan_karthi @alexandrecadrin
Our new paper on applying TractSeg Tractometry to find white matter changes in catatonia patients was accepted at Nature Neuropsychopharmacology. Check it out: nature.com/articles/s4138…
You want to preview your medical nifti images on the terminal e.g. on a remote server? Check out github.com/wasserth/niicat @jeremyphoward @alexandrecadrin
TractSeg v2.1 is here. New features: - works with FSL BedpostX - improved Tractometry + statistical analysis - lots of minor improvements github.com/MIC-DKFZ/Tract… Happy to see that TractSeg is used by more than 20 institutions from over 10 different countries.
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