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@cppape
@cmci_
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@jug_lab
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🚨 Exciting news! 🚨 Check out this data release of 7⃣ FIB-SEM and segmentation volumes from a single P7 mouse as a preprint on bioRxiv 🐁🎉 👉biorxiv.org/content/10.110… @avweigel @BogovicJohn @korfffly @preibischs @MountainRhoades @yurii_zubov
I am thrilled to start an Assistant Professor in the Department of Biological Sciences at @DartmouthCollege in July 2024. We will study genetic & neural basis of behavior evolution & how behavior affects evolution. Recruiting talented & enthusiastic scientists to join the lab!
Our peer-reviewed song manuscript is up now at Current Biology with new data on the descending inputs to the circuit and inhibition within the circuit. Thanks to the coauthors, others that helped this work, the reviewers, and editors. sciencedirect.com/science/articl…
New preprint on Drosophila courtship song. This was a fun collaboration between the Dickson and Stern labs. Thanks to my coauthors and others that helped make this happen! Check it out and get in touch if you have any thoughts or questions! 1/5 biorxiv.org/content/10.110…
It had been a while since I last needed to process a large chunk of light sheet data on our cluster…. I guess the folks over in scientific computing missed me 😂. Thanks for the amazing gift!
This is an amazing effort from so many people @HHMIJanelia Congratulations also to my colleagues in Scientific Computing Software that developed Neuronbridge for this resource! @konrad_rokicki
Scientists created a searchable fluorescence microscopy image resource of Drosophila GAL4 driver expression patterns with single neuron resolution. Check out some of the images here: elifesciences.org/articles/80660…
Check out the latest @neuro_beyond with me as a guest! We talk about a wide range of topics, from image analysis for microscopy to latest developments in AI.
🚨NEW EPISODE ALERT: BIOLOGY AND AI🚨 Microscopy images 🔬are an important tool used in biological research 🧑🔬 and medicine 🏥. Automation of the processing 💻 of such images could radically reduce the time of the analysis and human bias. However, despite the latest impressive…
🚨 Excited to share our latest preprint about #DL4MicEverywhere 🌋, our very recent contribution to the sparking #DLaugmentedmicroscopy🔬🌟 🎯Our aim this time? Building #accessible, #flexible, #transparent, and #reproducible #DL ecosystems for #BIA 🤹(1/) doi.org/10.1101/2023.1…
Want to identify the type of a neuron from a 10 micron fragment of its wiring? SegCLR led to this and other surprising capabilities. An outstanding effort led by @sdorkenw & Peter Li and a wonderful collaboration with the Lichtman lab at Harvard and @AllenInstitute
From the Jain lab (@stardazed0): SegCLR automatically annotates brain EM data with information such as cellular subcompartments and cell types, using a self-supervised contrastive learning approach. @sdorkenw @Chinasaurli nature.com/articles/s4159…
#postdoc and #phdposition available in my lab in Marseille @centuri_ls & @inmed_u1249 🎉🎉 If you are interested in building models of brain computations and developing data analysis tools with cool experimental collaborators, please apply! More info: bit.ly/3MRGiVu
With Nataša Sladoje of #MIDAgroup @CBA_UU opening the event #CBIAS2023 with some SOTA #multimodal registration
Thoughts on #bioimaging formats (& @xkcd) from @jrswedlow, @notjustmoore, @dyfbrain, @BoSoxBioBeth, @sonamix, @martinjones78, @BogovicJohn, @AntjeKeppler, et al. out now in @nature's recently tech feature by @DrMichaelBrooks nature.com/articles/d4158… What are your thoughts? 🤔
🚨 We are recruiting postdocs! 🚨 Projects in our lab use a combination of experimental and computational techniques to study mouse visual behaviors and large-scale neural dynamics. See the new lab website: mouseland.github.io
#EMBOBioImage finished yesterday and one still feels excited about the growth of this outstanding community, its diversity, educational&collaborative spirit and the incredible amount of discoveries that is about to come 😍 thanks to organizers for the chance to join you🙏
Last day of #EMBOBioImage 🧐🤓Sessions are still in full swing and discussions going strong. Wishing everyone a safe trip back later today- and hope to see you next time. 👋
I wonder if I spend too much time thinking about aligning multimodal images... The view from our balcony in the Airbnb in #Marseille we stayed at for the #RugbyWorldCup2023 last weekend. Correlative Day and Night Imaging? #NotreDameDeLaGarde #CLEM
Deep Learning is not a quick fix for image processing 🔬🖥️🚫 (with @JwPylvanainen @gomez_mariscal and @BogovicJohn) #EMBOBioImage
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Who to follow
-
Constantin Pape
@cppape -
Kota Miura
@cmci_ -
Srini Turaga
@srinituraga -
Christian Tischer
@tischitischer -
Stephan Preibisch
@preibischs -
ʝuɢ lab
@jug_lab -
WEBKNOSSOS
@webknossos -
Aubrey Weigel
@avweigel -
ilastik Team and Anna Kreshuk's Lab
@ilastik_team -
Martin Weigert (maweigert.bsky.social)
@martweig -
Anna Klemm
@ahklemm -
Josh Moore
@notjustmoore -
Philipp Hanslovsky
@hanslovsky -
Martin Jones
@martinjones78 -
Tim-Oliver Buchholz
@tibuch_
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