@DrMicrobeson Profile picture

Mike Robeson

@DrMicrobeson

Assoc. Prof. at @uamshealth DBMI #bioinformatics #microbiome #primaryciliarydyskinesia Tweets are my own. Retweets/likes not necessarily endorsement. 😷

Joined July 2010
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Mike Robeson Reposted

🎉 Great news! Pylustrator, my open-source tool for creating publication-ready @matplotlib plots, works seamlessly with the latest Matplotlib version! 🖌️✨ Curious how it can transform your figures and save your changes as reproducible Python code? Let me show you! 🧵👇

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Mike Robeson Reposted

MultiOmicsIntegrator-MOI: A nextflow pipeline for integrated omics analyses academic.oup.com/bioinformatics…

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Mike Robeson Reposted

Just updated taxid-changelog. Now you can track each NCBI Taxonomy taxon's detailed changes in the past 10 years😮😱😃 This is the proudest work I've done in my past 10+ year academic career, cause it's useful and funny but no one else did this, haha. github.com/shenwei356/tax…


Mike Robeson Reposted

The mOTUs4 genome database: 2.83Mio systematically reconstructed MAGs and >900K isolate and single cell-assembled genomes, all clustered into 124K species-level clusters. Paper out at @NAR_Open: doi.org/10.1093/nar/gk… 1/5


Mike Robeson Reposted

🌍 Just published in 14+ journals! AMI & global leaders call for microbial solutions to tackle climate change. Let’s harness nature’s power to capture carbon & restore ecosystems—time to act! 🧬🌱 #ClimateAction #MicrobialSolutions #COP29Baku academic.oup.com/sumbio/article…

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Mike Robeson Reposted

The prominent role of the gut microbiome in modulating response to stress and circadian rhythm cell.com/cell-metabolis… @Cell_Metabolism open-access, by @jfcryan @gabriel_tofani @UCC and colleagues

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Mike Robeson Reposted

We are looking to hire a postdoctoral fellow! Please help spread the word! #ProstateCancer #microbiome #pathology labs.pathology.jhu.edu/sfanos/sfanos-…


Mike Robeson Reposted

Improving bioinformatics software quality through teamwork academic.oup.com/bioinformatics… from @AMathelier and colleagues

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Mike Robeson Reposted

Metal availability shapes early life microbial ecology and community succession journals.asm.org/doi/10.1128/mb… -- cool new microbe-nutrition axis revealed by the @joeyzacks lab


Mike Robeson Reposted

Do you want to rapidly predict bootstrap values via machine learning? You can now use our Educated Bootstrap Guesser: academic.oup.com/mbe/advance-ar…


Mike Robeson Reposted

Exciting PhD and Postdoc Opportunities in Environmental Microbiology in Our Department! If you’re passionate about this field or know someone who is, please share! bit.ly/3Ui4ELJ bit.ly/3NePrax


Mike Robeson Reposted

workflowhub.eu: a registry for computational workflows arxiv.org/abs/2410.06941 (Nextflow, Snakemake, KNIME, Galaxy, CWL, others)

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Mike Robeson Reposted

Happy to announce that our (me and @YunWilliamYu) metagenome profiler sylph (github.com/bluenote-1577/…) is now published in @NatureBiotech! 1/5

Rapid species-level metagenome profiling and containment estimation with sylph go.nature.com/3BBVqDC

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Mike Robeson Reposted

DNA extraction methods affect perceived composition of eukaryotic and prokaryotic microbes.The bias is greater for eukaryotes especially soft-bodied and hard-shelled species.These methods are crucial for accurate study of eukaryotic communities in biofilms doi.org/10.1002/mbo3.1…


Mike Robeson Reposted

How to determine if a compound qualifies as a prebiotic is challanging and has been confusing? Enjoyed contributing to this ‘expert recommendation’ published in @NatRevGastroHep that provides a framework for the classification of compounds as prebiotics. nature.com/articles/s4157…


Mike Robeson Reposted

Doing good science is 90% finding a science buddy to constantly talk to about the project.

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